One Month International Bioinformatics Workshop on - Genomes : Sequence to Insights (6th ed, 2025) by Decode Life

Registration is open for one month Bioinformatics Workshop by DE<code>LIFE

Duration : 10 May - june 4, 2025

Registration Link - https://decodelife.co.in/

Fees: Rupees 1300 for Indian Participants /USD 30 for International Participants.

Timing : 7. 00 PM Indian standard time.

Schedule

Date	Day	Topic
May 10	Saturday	Introduction to linux command line
May 11	Sunday	Advance Linux Commands
May 12	Monday	R Programming
May 13	Tuesday	R Programming
May 14	Wednesday	R Programming
May 15	Thursday	OFF
May 16	Friday	OFF
May 17	Saturday	NGS file formats, Quality Control and Preprocessing
May 18	Sunday	Assembly statistics, assembly quality assessment
May 19	Monday	Genotyping, Phenotyping, Reference and pan genome
May 20	Tuesday	Variants (SNP and Indel) identification
May 21	Wednesday	OFF
May 22	Thursday	denovo based Variants (SNP and Indel)
May 23	Friday	SNP pruning and annotation
May 24	Saturday	Structure analysis and GWAS
May 25	Sunday	Fundamentals of Single-Cell Genomics Overview of single-cell analysis and its importance. Comparison with bulk sequencing. Key technologies and workflows (scRNA-seq, scATAC-seq).
May 26	Monday	Quality Control and Preprocessing Filtering low-quality cells. Normalization techniques (log-normalization, SCTransform). Batch effect correction (Seurat, CCA, Harmony).
May 27	Tuesday	Dimensionality Reduction and Clustering PCA, t-SNE, UMAP for data visualization. Clustering and Cell Type Identification Clustering methods (Louvain, Leiden, K-means).
May 28	Wednesday	OFF
May 29	Thursday	Cell Type Annotation Marker gene identification. Reference-based and de novo annotation methods.
May 30	Friday	Differential Expression and Pathway Analysis Differential Gene Expression (DGE) Analysis Identifying cluster-specific and condition-specific genes. Pseudobulk analysis.
May 31	Saturday	Single-Cell RNA Velocity and Time-Series Analysis Predicting future cell states using scVelo. Mapping developmental transitions. Advanced time-series modeling for single-cell data.
June 1	Sunday	Trajectory and Pseudotime Analysis Reconstructing cell differentiation pathways (Monocle). Identifying branching and decision points
June 2	Monday	OFF
June 3	Tuesday	Cell-Cell Communication Analysis Intercellular crosstalk analysis. Practical session using CellChat in R.
June 4	Wednesday	Single-Cell Immune Profiling TCR/BCR sequencing. CyTOF and immune cell interactions.