2
DAYS WORKSHOP ON TRANSCRIPTOME : RNA SEQ
7 - 8th Dec 2018
Our 2 day comprehensive workshop on “NGS Data Analysis” aims at
providing systematic Hands-on-Training on using advanced Data Analysis
application/tools. This workshop had been conceptualized by eminent scientist
having substantial experience in the field of Data Analysis.
Salient Features
Introduction to Galaxy platform and
walk through a multi-step next generation sequencing (NGS) data analysis,
starting with quality control.
Review common choices in NGS data
analysis, and demonstrate them within the context of Galaxy, taking full
advantage of Galaxy's rich tool set and visualization capabilities.
Brief overview of what is needed to
set up your own local Galaxy instance. Galaxy is an open-source, NIH-funded
project.
Topics Covered
· Introduction
to sequencing technologies from a data analysts view
· Common NGS
data analysis issues
· Applications
of sequencing technologies
· Introduction to Understanding the transcriptome data and how it’s
generated via NGS toolkits
· Analyzing the transcriptomic data to understand gene expression and
differential gene expression
· Introduction to ChIP-seq analysis with Galaxy
Practical Application:
·
Understand
the Next generation sequencing
·
Discuss
the advantages and limitations of the sequencing technologies
·
Learn
how to use Galaxy server to analyze the NGS data
·
Deal
with the raw Illumina data with quality evaluation and filtering
·
Map
reads to the reference genomes, call SNPs and predict their phenotype
consequence
·
Alignment
to a reference, de-novo assembly, SNP and structural variant-calling of next
generation DNA and RNA data
·
Use
some bioinformatics software and tools to aid with the analysis of NGS data
·
Understanding
Gene expression and Differential gene expression
·
Visualize your data in genome browsers and
make conclusions
·
Participants
will receive workshop training certificate.
Databases and Tools & Software’s used
BWA, Bowtie2, STAR, SAM/BAM format, samtools, BEDtools,
HTcount, DEseq, MACCS, wAAOVAR, NCBI, EMBL, Galaxy and many more
Eligibility: Working professional,Scientists /Research
fellows (National Laboratories, Universities & other R&D institutions)
and Graduate / Post graduate students in Engineering / Biological / Chemical
sciences/ Medical discipline.
Fees: For Registration
Registration
|
Dates
for Registration
|
Students
|
Professor/
Researcher
|
NRI/Foreigner
|
Early
Bird
|
Till 7th
Nov 2018
|
3500/-
|
4500/-
|
5500/-
|
Standard
|
10th
Nov to 7th Dec 2018
|
4500/-
|
5500/-
|
6000/-
|
Discount Of Rs.500 each if
registered in group of 2 or more
· *Includes lunch, & snacks.
· **Id proof required at the time of registration.
· ***Fees are non transferrable & non refundable in any case.
Speakers:
Mr.Sameer Chaudhary
CSO, RASA Life Science Informatics.
CSO, RASA Life Science Informatics.
Sakshi Rawat
Application Scientist, RASA Life Science Informatics.
Application Scientist, RASA Life Science Informatics.
Gouri Ahir
Application Scientist Team, RASA Life Science
Informatics.
Punnag Ghaisas
Application Scientist Team, RASA Life Science
Informatics.
Venue:
RASA Life Science Informatics
4th floor.46/10 shakuntal,
Law college Road,Erandwane 411004
4th floor.46/10 shakuntal,
Law college Road,Erandwane 411004
Phone No. 7798668315/7875793891/
8411927535
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