One Month International Bioinformatics Workshop on - Genomes, Networks & Pathways - 5th Ed. 2024 by Decode Life

Registration is open for one month Bioinformatics Workshop by DE<code>LIFE

Duration: September 28 - October 21, 2024 ( Timing 7 PM Indian Standard Time)

Registration Link - https://decodelife.co.in

Fees: Rupees 1200 for Indian Participants /USD 25 for International Participants

Schedule

Date	Day	Topic
September 28	Saturday	Introduction to linux command line
September 29	Sunday	Advance Linux Commands
September 30	Monday	Basics of R Programming
October 1	Tuesday	Basics of R Programming
October 2	Wednesday	Basics of R Programming
October 3	Thursday	Git Tutorials for Beginners
October 4	Friday	RNAseq Analysis for Identifying DEG,s
October 5	Saturday	RNAseq Analysis for Identifying DEG,s
October 6	Sunday	OFF
October 7	Monday	Databases : String, Biogrid, Intact, HPRD, Mint, Dip database
October 8	Tuesday	Computational techniques like structure based approaches, gene expression, domain pairs, gene fusion, orthology based approaches for predicting Protein-protein interaction in silico
October 9	Wednesday	Graph theory, protein-protein interaction (PPI) networks and databases,download PPI data from HIPPIE database.
October 10	Thursday	Centrality calculation & ranking of network genes using –igraph R package,NetworkX Python package, -GUI softwares
October 11	Friday	Practical demonstration of Cytoscape with useful plug-ins
October 12	Saturday	DNA-methylation Whole Genome Bisulfite Sequencing (WGS) Quality control of WGBS data
October 13	Sunday	Mapping of WGBS data to reference genome Methylation call Visualisation of the genome-wide methylation profile Plotting the methylation profile across different genomic regions
October 14	Monday	ATAC Seq: Introduction to ATAC-Seq Difference between bulk and single cell ATAC-Seq ATAC-Seq Workflow
October 15	Tuesday	ATAQ Seq: packages/tools to process scATAC-Seq Reading and exploring the data Preprocessing and quality control for scATAC-Seq Nucleosome Signal and Nucleosome banding pattern Transcription Start Site (TSS) enrichment score Clustering, differential accessibility analysis, RNA activity estimation
October 16	Wednesday	ATAC Seq: strategies to annotate scATAC-Seq cells Integrating scATAC-Seq with scRNA-Seq Visualization
October 17	Thursday	CHIPseq - 1. Obtaining FASTQ files of the samples using SRA accession IDs 2. Perform quality check of the sample sequences using FASTQC 3. Trimming and removal of adaptor sequences using Trimmomatic
October 18	Friday	CHIPseq -4. Aligning to reference genome (human hg38) using Bowtie2 5. Peak calling using MACS2
October 19	Saturday	MNase-Seq Introduction and Preliminary Data Processing (Day 1) Nucleosome Occupancy MNase-Seq Quality control of Mnase-Seq data
October 20	Sunday	Mapping of MNase-Seq data to reference genome using Bowtie Nucleosome positioning identification using iNPS Differential nucleosome positioning using DANPOS Visualisation and plotting of genome-wide Nucleosome Occupancy
October 21	Monday	Reactome Pathway Database