Five day Virtual Workshop on NGS and Transcriptomic Data Analysis | 20th-24th Sep 2024
Quaxon Bio & IT Solutions, India is going to conduct a Five day virtual workshop (41st International virtual workshop) on “NGS and Transcriptomic Data Analysis” to 20-24 Sep 2024.
Contact to book your
seat: +91-9692521875
Website
Post: https://qbiits.org/5-day-workshop-transcriptomic-data-analysis/
Plat form: Google Meet
Key benefits
Hands on session using real example
Designed for beginner to advance level learners
Complete one-to-one session
E-Certificate
for all participants
Recording of all session will be given for thorough practice
About the topic:
NGS technology is recently developed tool for transcriptome profiling that uses deep sequencing methods. It is considered to be most precise method of measurement of level of transcripts in a cell and their quantity.
The transcriptome is
the complete set of transcripts in a cell, and their quantity, for a specific
developmental stage or physiological condition. Understanding the transcriptome
is essential for interpreting the functional elements of the genome and
revealing the molecular constituents of cells and tissues, and also for
understanding development and disease progression. It is today adopted by
researchers across bioscience discipline to study and profile differential
expression and use it for various purposes downstream.
This programme will be useful for students, research
fellows and faculties from bioscience and pharmaceutical background.
Importance of NGS Data Analysis in Bioscience
Research
Next-generation sequencing (NGS)
transcriptomics is relevant to multiple branches of life sciences, including genomics,
molecular biology, bioinformatics, and systems biology. It allows for
comprehensive analysis of RNA transcripts, providing insights into gene
expression, regulation, and function across various organisms. Applications
include identifying disease biomarkers, understanding cellular responses,
studying genetic variations, and developing personalized medicine.
Additionally, it is instrumental in agricultural research for crop improvement
and in environmental studies for assessing microbial communities and ecosystem
health.
Training curriculum
Day wise Schedule
Day
1: NGS Basics & Conda Environment Setup
- Introduction
to NGS
- Overview
of NGS technology
- Common
NGS workflows (DNA-seq, RNA-seq)
- Conda
Environment Basics
- Installing
and setting up Conda
- Creating,
activating, and managing environments
- Linux
Basics
- Essential
Linux commands (navigation, file operations)
Day
2: R Basics & Command Line
- R
Basics
- R
installation and setup
- Basic
R syntax and data structures (vectors, data frames)
- Command-line
usage with R (installing packages, running scripts)
- Linux
Command Line
- Using
the command line for file manipulation
- Scripting
basics in Linux (bash scripting)
Day
3: Alignment Theory & Hands-on
- Alignment
Theory
- Basics
of alignment (DNA/RNA alignment)
- Tools:
BWA, Bowtie, STAR
- Understanding
reference genomes and indexes
- Hands-on
- Aligning
sample data to a reference genome using a tool like STAR or BWA
Day
4: FeatureCount & Differential Expression in DESeq2
- FeatureCount
Theory & Hands-on
- Understanding
read counting and gene expression quantification
- Hands-on
with FeatureCount for counting reads
- Differential
Expression with DESeq2
- Introduction
to DESeq2
- Running
a basic differential expression analysis using DESeq2
Day
5: Dimensionality Reduction & Pathway Analysis
- Dimensionality
Reduction & PCA
- Theory
of PCA for dimensionality reduction
- Hands-on
PCA in R
- Pathway
Analysis (45 min)
- Basics
of downstream pathway analysis (GSEA, KEGG)
- Practical hands-on example using pathway analysis tools
Eligibility
Students, Faculties and research scholar from all
biological science(Biotechnology, pharmaceutical science, microbiology,
bioinformatics and other allied areas) having computer operation skill are
eligible to participate.
Participation Fee
For Indians
Rs.2000/- for students, pursuing B.Sc/M.Sc
Rs.2500/- for Faculty, PhD Scholar/research
scholar and other working persons
For foreign Participants
Participation
fee: $35/-
How to Participate?
Step-1: Make payment of participation fee by visiting the below URL and note your transaction number or take the screen shot
Payment
link for Indian Participants
Payment link for
Foreign Participants(outside of India)
Visit the below link to pay the fee $35
step-2 Must
Register After The Payment Using Below Link
https://docs.google.com/forms/d/1P0_cue9BIeLjVxTYTzLOLkWY0xLJvq7J3Fksr4x49W4/edit
About Us
Quaxon Bio & IT
Solutions is a fastest growing EduTech
start-up established and registered to the Ministry of Micro, Small and
Medium Enterprises, Government of India. Our mission is to act as an
industry-academic interface, to excel in knowledge transformation and producing
a highly skilled workforce equipped with next-generation skills. We are
delivering high demand skills via virtual workshop related to bioinformatics
and data science with international participants, facilitating the exchange of
cutting-edge research and ideas around the globe. In recent past we have
conducted numerous workshop on advance biology and Bioinformatics with
international participants from 17+ countries.
Contact for any
enquiry:
Contact +91-9692521875 or write to us quaxonbiits@gmail.com
For detail term and
condition kindly visit the website post
https://qbiits.org/5-day-workshop-transcriptomic-data-analysis/
System requirement 4 GB RAM or higher, . 2-core 4 threads processor or
higher (Intel i3 minimum for Intel builds and Ryzen 3 for AMD builds). Please
refer to system properties under settings. Windows
10, version 1909 or higher (for Windows systems)
OR
Ubuntu, version 14.04 or higher/ any other similar Linux distro
(for Linux systems) Visit Website post https://qbiits.org/5-day-workshop-transcriptomic-data-analysis/
for
more information.
0 Comments